Sunday, August 4, 2013

Mechanism that allows bacteria to infect plants may inspire cure for eye disease

Mechanism that allows bacteria to infect plants may inspire cure for eye disease [ Back to EurekAlert! ] Public release date: 4-Aug-2013
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Contact: Dustin Hays
neinews@nei.nih.gov
301-496-5248
NIH/National Eye Institute

By borrowing a tool from bacteria that infect plants, scientists have developed a new approach to eliminate mutated DNA inside mitochondriathe energy factories within cells. Doctors might someday use the approach to treat a variety of mitochondrial diseases, including the degenerative eye disease Leber hereditary optic neuropathy (LHON). The research, published online today in Nature Medicine, was funded by the National Eye Institute (NEI), a part of the National Institutes of Health (NIH).

Mitochondria convert fuel from food into a form of energy that cells can use. They also make enzymes for a variety of cell functions, and in humans they are the only cell component other than the nucleus that houses genes. Mitochondrial gene mutations can lead to a variety of health problems including muscle weakness, heart disease, and blindness in the case of LHON. Most cells contain thousands of mitochondrial DNA (mtDNA) copies. People with mitochondrial disease often have both mutant and normal mtDNA within their cells. No cures exist for mitochondrial diseases and few effective treatments are available.

Searching for strategies to repair mitochondrial gene defects, a group of investigators at the University of Miami Miller School of Medicine explored proteins called transcription activator-like (TAL) effectors. In nature, TAL effectors are found only in certain types of plant-infecting bacteria. They enable the bacteria to use plant DNA to multiply and spread infection.

Scientists recently began using TAL effectors to modify DNA in a variety of organisms. In the lab, TAL effectors can be fused with DNA-breaking proteins called nucleases. These TAL effector nucleases (TALENs) can be used to add or remove specific genes or correct gene mutationstechniques that fall under the broad category of genome editing. During the past few years, scientists have begun adapting TALENs and other genome-editing tools for gene therapy. Until now, scientists had only used TALENs to edit genes in the cell nucleus. Today's report marks the first time TALENs have been used to edit mitochondrial genes.

"Mitochondrial-targeted TALENS (mitoTALENs) represent the most promising hope for an effective treatment of diseases caused by mutations in mtDNA," said Carlos T. Moraes, Ph.D., a professor of neurology and cell biology at the University of Miami Miller School of Medicine and principal investigator of the study. "Our research demonstrates that mitoTALENs can substantially decrease or eliminate mutant mtDNA without harming normal mtDNA."

Using cells in the lab, the investigators designed mitoTALENs to bind and cut mitochondrial DNA that had a specific mutation in the gene Complex I, which causes LHON. The scientists then tested whether the mitoTALENs eliminated the mutant mtDNA.

Analysis revealed a temporary drop in cells' total mtDNA, which was due to a reduction in mutant mtDNA. "Once the mitoTALENs bound and cut the DNA at the specified target, the mutant mtDNA was degraded," said Moraes. "The drop in total mtDNA stimulated the cells to increase their mtDNA by replicating the unaffected molecules. Two weeks later, mtDNA levels had returned to normal. But since the mutant mtDNA was destroyed, the cells had mostly normal mtDNA."

Reducing but not necessarily eliminating all mutant mtDNA from a person's cells would be sufficient to treat many mitochondrial diseases, Moraes said. Mutant mtDNA typically does not cause signs of disease until it makes up 80 percent or more of the total mtDNA in a cell, which helps explain why age of onset, the constellation of symptoms, and disease severity varies among individuals with the same mutation. "A modest reduction in mutant mtDNA is likely sufficient to effectively treat disease," he said.

"The science in this project advances an imaginative and very clever approach that may one day lead to a therapeutic strategy for mitochondrial diseases," said Houmam Araj, Ph.D., director of the lens/cataract and oculomotor/neuro-ophthalmology programs at the NEI.

Symptoms of LHON include an abrupt loss of central vision at about age 20 in one eye followed shortly thereafter by the other eye. Although a variety of gene mutations are linked to the disease, most cases involve Complex I mutations, which cause degeneration of the nerves in the back of the eye that transmit visual information to the brain. Neurological problems such as tremors may also occur.

Getting mitoTALENs into cells in tissues presents a formidable challenge, however. The scientists plan next to test the approach in animals.

###

Additional Miller School members of the research team included Sin L. Williams, Ph.D., Sandra R. Bacman, Ph.D., Milena Pinto, Ph.D., and Susana Peralta, Ph.D.

The research was supported in part by the National Eye Institute (EY010804), the National Institute on Aging (AG036871), and the National Institute of Neurological Disorders and Stroke (NS079965).

Reference: Bacman SR, et al. Specific elimination of mutant mitochondrial genomes in patient-derived cells by mitoTALENs. Nature Medicine. Published online Aug. 4, 2013. http://dx.doi.org/10.1038/nm.3261.

The National Eye Institute, part of the National Institutes of Health, leads the federal government's research on the visual system and eye diseases. NEI supports basic and clinical science programs that result in the development of sight-saving treatments. For more information, visit http://www.nei.nih.gov.

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit http://www.nih.gov.

NIH...Turning Discovery Into Health


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AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert! system.


Mechanism that allows bacteria to infect plants may inspire cure for eye disease [ Back to EurekAlert! ] Public release date: 4-Aug-2013
[ | E-mail | Share Share ]

Contact: Dustin Hays
neinews@nei.nih.gov
301-496-5248
NIH/National Eye Institute

By borrowing a tool from bacteria that infect plants, scientists have developed a new approach to eliminate mutated DNA inside mitochondriathe energy factories within cells. Doctors might someday use the approach to treat a variety of mitochondrial diseases, including the degenerative eye disease Leber hereditary optic neuropathy (LHON). The research, published online today in Nature Medicine, was funded by the National Eye Institute (NEI), a part of the National Institutes of Health (NIH).

Mitochondria convert fuel from food into a form of energy that cells can use. They also make enzymes for a variety of cell functions, and in humans they are the only cell component other than the nucleus that houses genes. Mitochondrial gene mutations can lead to a variety of health problems including muscle weakness, heart disease, and blindness in the case of LHON. Most cells contain thousands of mitochondrial DNA (mtDNA) copies. People with mitochondrial disease often have both mutant and normal mtDNA within their cells. No cures exist for mitochondrial diseases and few effective treatments are available.

Searching for strategies to repair mitochondrial gene defects, a group of investigators at the University of Miami Miller School of Medicine explored proteins called transcription activator-like (TAL) effectors. In nature, TAL effectors are found only in certain types of plant-infecting bacteria. They enable the bacteria to use plant DNA to multiply and spread infection.

Scientists recently began using TAL effectors to modify DNA in a variety of organisms. In the lab, TAL effectors can be fused with DNA-breaking proteins called nucleases. These TAL effector nucleases (TALENs) can be used to add or remove specific genes or correct gene mutationstechniques that fall under the broad category of genome editing. During the past few years, scientists have begun adapting TALENs and other genome-editing tools for gene therapy. Until now, scientists had only used TALENs to edit genes in the cell nucleus. Today's report marks the first time TALENs have been used to edit mitochondrial genes.

"Mitochondrial-targeted TALENS (mitoTALENs) represent the most promising hope for an effective treatment of diseases caused by mutations in mtDNA," said Carlos T. Moraes, Ph.D., a professor of neurology and cell biology at the University of Miami Miller School of Medicine and principal investigator of the study. "Our research demonstrates that mitoTALENs can substantially decrease or eliminate mutant mtDNA without harming normal mtDNA."

Using cells in the lab, the investigators designed mitoTALENs to bind and cut mitochondrial DNA that had a specific mutation in the gene Complex I, which causes LHON. The scientists then tested whether the mitoTALENs eliminated the mutant mtDNA.

Analysis revealed a temporary drop in cells' total mtDNA, which was due to a reduction in mutant mtDNA. "Once the mitoTALENs bound and cut the DNA at the specified target, the mutant mtDNA was degraded," said Moraes. "The drop in total mtDNA stimulated the cells to increase their mtDNA by replicating the unaffected molecules. Two weeks later, mtDNA levels had returned to normal. But since the mutant mtDNA was destroyed, the cells had mostly normal mtDNA."

Reducing but not necessarily eliminating all mutant mtDNA from a person's cells would be sufficient to treat many mitochondrial diseases, Moraes said. Mutant mtDNA typically does not cause signs of disease until it makes up 80 percent or more of the total mtDNA in a cell, which helps explain why age of onset, the constellation of symptoms, and disease severity varies among individuals with the same mutation. "A modest reduction in mutant mtDNA is likely sufficient to effectively treat disease," he said.

"The science in this project advances an imaginative and very clever approach that may one day lead to a therapeutic strategy for mitochondrial diseases," said Houmam Araj, Ph.D., director of the lens/cataract and oculomotor/neuro-ophthalmology programs at the NEI.

Symptoms of LHON include an abrupt loss of central vision at about age 20 in one eye followed shortly thereafter by the other eye. Although a variety of gene mutations are linked to the disease, most cases involve Complex I mutations, which cause degeneration of the nerves in the back of the eye that transmit visual information to the brain. Neurological problems such as tremors may also occur.

Getting mitoTALENs into cells in tissues presents a formidable challenge, however. The scientists plan next to test the approach in animals.

###

Additional Miller School members of the research team included Sin L. Williams, Ph.D., Sandra R. Bacman, Ph.D., Milena Pinto, Ph.D., and Susana Peralta, Ph.D.

The research was supported in part by the National Eye Institute (EY010804), the National Institute on Aging (AG036871), and the National Institute of Neurological Disorders and Stroke (NS079965).

Reference: Bacman SR, et al. Specific elimination of mutant mitochondrial genomes in patient-derived cells by mitoTALENs. Nature Medicine. Published online Aug. 4, 2013. http://dx.doi.org/10.1038/nm.3261.

The National Eye Institute, part of the National Institutes of Health, leads the federal government's research on the visual system and eye diseases. NEI supports basic and clinical science programs that result in the development of sight-saving treatments. For more information, visit http://www.nei.nih.gov.

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit http://www.nih.gov.

NIH...Turning Discovery Into Health


[ Back to EurekAlert! ] [ | E-mail | Share Share ]

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AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert! system.


Source: http://www.eurekalert.org/pub_releases/2013-08/nei-mta080213.php

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Egypt ministry calls on protesters to depart

CAIRO (AP) ? An Egyptian police official says that if followers of ousted President Mohammed Morsi abandon their protest sit-ins, this will allow his Muslim Brotherhood group to have a normal role in the political process.

Saturday's televised remarks by Interior Ministry spokesman Hany Abdel-Latif came as authorities announced plans to break up the two main Cairo sit-ins by erecting cordons to prevent people from entering them.

Morsi's backers, including his Muslim Brotherhood group, have vowed to continue protesting until he's reinstated.

"If you believe you are bringing victory to the Brotherhood (by pursuing the sit-ins), it is your safe and secure departure that will allow the Brotherhood to go back to its role in the political process," Abdel-Latif said.

Morsi was overthrown in a July 3 coup after millions demonstrated demanding his overthrow.

Source: http://news.yahoo.com/egypt-ministry-calls-protesters-depart-112800919.html

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Chinese Hackers Have Been Caught Hijacking a Decoy US Water Plant

Chinese Hackers Have Been Caught Hijacking a Decoy US Water Plant

Chinese hackers have been harassing the US in a series of cyberattacks, but we've started trying to talk it out and cool this all down. But in the meantime, a security researcher has just revealed that he caught a team of Chinese hackers hijacking a fake water plant he set up. And aside from spotting the fake, they knew exactly what they were doing.

Read more...

    


Source: http://feeds.gawker.com/~r/gizmodo/full/~3/sVUoaBwANyE/chinese-hackers-just-got-caught-hijacking-a-decoy-water-1012520726

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Wildlife Sound Archivist Remembered

Twenty years ago Saturday, Ted Parker, one of the world's greatest field biologists and sound archivists, died in a plane crash. He made nearly 11,000 wildlife recordings, and could identify some 4,000 different bird species by just the sound of their vocalizations. In this audio montage from Cornell Lab of Ornithology, director John Fitzpatrick offers a remembrance.

Copyright ? 2013 NPR. For personal, noncommercial use only. See Terms of Use. For other uses, prior permission required.

LINDA WERTHEIMER, HOST:

Twenty years ago today, Ted Parker, one of the world's great ornithologists and sound recordists died in a plane crash in Equator. He was only 40. Parker contributed nearly 11,000 wildlife recordings to the Cornell Lab of Ornithology's Macaulay library.

He could identify some 4,000 different bird species by sound alone. In this audio montage, the lab's director, John Fitzpatrick offers a remembrance.

JOHN FITZPATRICK: I've rarely met anybody as passionate about his love of nature and of birds than Ted Parker.

(SOUNDBITE OF BIRDS AND MAN SPEAKING)

TED PARKER: A great flock up here. I don't know if you can see all these things moving.

FITZPATRICK: He became extraordinary at being able to hear and pick out birds far away, much more acutely than most of us mere mortals can do.

PARKER: Must do about 18 species from this tree here above us right now.

FITZPATRICK: He began learning things about South American birds that nobody knew, and he could compare different species.

PARKER: Within the flock there's a small group of species, maybe half a dozen or so that spend all their lives together and move through an area maybe five or six acres in the forest. Another 20 or more species will follow them. There's obviously safety in numbers. The more eyes you have looking for predators, the greater your chances of surviving.

FITZPATRICK: He did not have an advanced degree. He didn't have time to go to school, basically is how he put it. He was out exploring, he was out learning, he was talking with people, actually getting meetings with government officials and even heads of state about the importance of considering the natural areas on the eastern slopes of the Andes.

Most importantly, he got into bird sound and he began recording birdcalls.

PARKER: Most of the experience for me has always been auditory. It's more than 50 percent of everything that's happening in a forest, and so I like to try to excite other people and turn other people on to all the sounds.

FITZPATRICK: The body of work that Ted accumulated, the collections of bird songs and calls from across the American tropics is a tremendous addition to the entire field of ornithology. And mourning his loss and celebrating his life made each one of us say to each other we're going to have to work twice as hard now to be able to accomplish what we think we can do in conservation because Ted's not there.

WERTHEIMER: John Fitzpatrick, director of the Cornell Lab of Ornithology remembering Ted Parker. You can find a link to download Parker's voices of the Peruvian Rainforest on our Facebook page, NPR Weekend. That audio montage was produced by Bill McQuay. This is NPR News.

(SOUNDBITE OF MUSIC)

Copyright ? 2013 NPR. All rights reserved. No quotes from the materials contained herein may be used in any media without attribution to NPR. This transcript is provided for personal, noncommercial use only, pursuant to our Terms of Use. Any other use requires NPR's prior permission. Visit our permissions page for further information.

NPR transcripts are created on a rush deadline by a contractor for NPR, and accuracy and availability may vary. This text may not be in its final form and may be updated or revised in the future. Please be aware that the authoritative record of NPR's programming is the audio.

Source: http://www.npr.org/templates/story/story.php?storyId=208543543&ft=1&f=1007

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Saturday, August 3, 2013

Ask Engadget: best retro gaming / homebrew machine?

Ask Engadget: best outdoor TV?

We know you've got questions, and if you're brave enough to ask the world for answers, then here's the outlet to do so. This week's Ask Engadget inquiry is from Brady, who just wants to play NBA Jam, dammit. If you're looking to ask one of your own, drop us a line at ask [at] engadget [dawt] com.

"Hey, I used to be really into the homebrew and homemade software communities, but times changed and I fell out of the scene. Now I'd like to get back into it, and would love a new device that'll let me play all of these old-school games without having to chop and change -- letting me swap between titles like Mario Kart 64 and NBA Jam without any effort. There are so many new options, from buying an OUYA through to snagging a new PC, so what's my best (and cheapest) bet? Plus, anything that can take a wireless controller is a big plus. Thanks!"

Well, we're thinking that if you're prepared to get your hands a little dirty, the OUYA can be turned into an Android-based emulator thanks to its hacking-friendly setup. If that's a bit too rich for your bones, however, you can set up EmulationStation on a Raspberry Pi which will let you run a wide variety of consoles from the same piece of hardware. Still, let's turn this question over to the Engadgeteers for them to share their experiences.

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Comments

Source: http://www.engadget.com/2013/08/03/ae-homebrew-console/?utm_medium=feed&utm_source=Feed_Classic&utm_campaign=Engadget

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Friday, August 2, 2013

Festival will make London a "paradise for cycling" predicts Mayor http://ow.ly/n...

Sorry, Readability was unable to parse this page for content.

Source: http://www.facebook.com/insidethegames/posts/10151643366739232

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Lloyds reports 1st H profits of 1.5 billion pounds

LONDON (AP) ? Lloyds Banking Group says it has strengthened its balance sheet as the part-nationalized lender reported first-half net profits of 1.5 billion pounds ($2.3 billion), versus a loss of 662 million pounds in the same period last year.

The bank on Thursday said its recovery was ahead of schedule and said that it won't need to raise additional capital to meet new requirements imposed by the Prudential Regulatory Authority.

That's in contrast to Barclays, which said earlier this week it would have to sell 5.8 billion pounds in new shares to strengthen its defenses against a repeat of the 2008 financial crisis.

Lloyds Chief Executive Antonio Horta-Osorio says the bank is profitable ? a fact that has enabled the government to begin the process of returning the group to private ownership.

Source: http://news.yahoo.com/lloyds-reports-1st-h-profits-1-5-billion-080949976.html

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